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  1. Barna Package
  2. BARNA-375

Add MIN_OBS parameter to allow quantifications for loci with spurious reads

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      Add MIN_OBS (--min-obs) parameter to set the minimum number of reads to be left in a locus when the system is solved. It can be expressed as an absolute number of reads (>1) or as fraction of the observed read count [0..1].

      With MIN_OBS > 0 the lp-solver will be forced to provide a deconvolution in all loci with > 0 annotation-mapped reads respectively read pairs. The derived quantifications may be variable in loci with less observations than changes that are necessary to perform the deconvolution.

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              emilio Emilio Palumbo
              emilio Emilio Palumbo
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