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  1. Barna Package
  2. BARNA-373

Capacitor does not deconvolute locus when using only sam primary alignments

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Details

    • Bug
    • Status: Resolved
    • Major
    • Resolution: Fixed
    • Capacitor 1.6 (API 1.28)
    • Capacitor 1.6.1 (API 1.29)
    • Capacitor
    • None

    Description

      Capacitor assigns 0 reads to all the transcripts of a locus when SAM_PRIMARY_ONLY True

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          relates to

          Improvement - An improvement or enhancement to an existing feature or task. BARNA-375 Add MIN_OBS parameter to allow quantifications for loci with spurious reads

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Resolved

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              emilio Emilio Palumbo
              emilio Emilio Palumbo
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              Dates

                Created:
                Updated:
                Resolved: