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  1. Barna Package
  2. BARNA-50

Simulator creates reads exceeding transcript start by (-1)

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Details

    • Bug
    • Status: Resolved
    • Major
    • Resolution: Fixed
    • API 1.0
    • API 1.0
    • Simulator
    • None

    Description

      in file mm9_no_tails.bed there are a bunch of reads including genomic coordinate 3103021 (BED-coordinate +1)

      chr11 3103020 3103095 chr11:3102356-3144591W:NM_001166549:488:3715:0:199:S/2 0 + . . 0,0,0 75 0

      for transcript NM_001166549 starting at 3103022, first exon:

      chr11 mm9_refGene exon 3103022 3103329 0.000000 + . gene_id "NM_001166549"; transcript_id "NM_001166549";

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            micha Micha Sammeth
            micha Micha Sammeth
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            Dates

              Created:
              Updated:
              Resolved: