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  1. Barna Package
  2. BARNA-335

flux crashes on GTF with spike-ins

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Details

    • Bug
    • Status: Open
    • Major
    • Resolution: Unresolved
    • Capacitor 1.4 (API 1.24)
    • None
    • Capacitor
    • None

    Description

      hey Micha/Emilio
      flux is crashing with some java.lang.ArrayIndexOutOfBoundsException on spike-in sequences. See ENCLB056ZZZWold.bam.gencode.v16.spikeins.err for details (also available at CRG under /users/rg/jlagarde/projects/encode/scaling/whole_genome/analysis/flux_capacitor/20131202_encode3_evaluation_datasets/stranded_data/logs.
      Removing the spike-in GTF records solves the problem (see ENCLB041ZZZWold.bam.gencode.v16.nospikeins.err)
      thanks
      j

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            micha Micha Sammeth
            jlagarde Julien Lagarde
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              Created:
              Updated: