Details
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Improvement
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Status: Open
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Trivial
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Resolution: Unresolved
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AStalavista 3.1 (API 1.21)
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None
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None
Description
Read IDs output with the UNIQUE_ID flag enabled automatically carry a strand information: /1 is forced to be sense, /2 is automatically anti-sense
In some scenarios it might be desirable to have a mate numbering independent of the strandedness of the read (but with an UNIQUE_ID).