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  1. Barna Package
  2. BARNA-29

Fatal JVM Crash while running on linux

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Details

    • Bug
    • Status: Resolved
    • Major
    • Resolution: Fixed
    • API 1.0
    • API 1.0
    • Simulator
    • None

    Description

      Micha, assigned you this just to make sure you get an email.

      The tests run without any "obvious" error message, but I saw this in the console output:

      [INFO] 
      [TICTAC] I finished flux in 0 sec.
      Cheers!
      	deflating 
      [PRE-CHECK] I am checking availability of the required lpsolve JNI libs.
      #
      # A fatal error has been detected by the Java Runtime Environment:
      #
      #  SIGSEGV (0xb) at pc=0x000000000000b0fe, pid=26419, tid=140106213869312
      #
      # JRE version: 6.0_26-b03
      # Java VM: Java HotSpot(TM) 64-Bit Server VM (20.1-b02 mixed mode linux-amd64 compressed oops)
      # Problematic frame:
      # C  0x000000000000b0fe  float+0xf203e0fe
      #
      # An error report file with more information is saved as:
      # /var/jenkins/jobs/fbi.genome.reconstruction/workspace/hs_err_pid26419.log
      #
      # If you would like to submit a bug report, please visit:
      #   http://java.sun.com/webapps/bugreport/crash.jsp
      #
      Aborted
      [ERROR] There are test failures.
      

      see: http://fenris.ti00a1.pcb.ub.es/jenkins/job/fbi.genome.reconstruction/423/console

      Interesting that it reports test failures here but ignores them alter.
      Anyways ... looks like a serious problem with the lpsolver library on linux, or is this intended by your test ?

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            thasso Thasso Griebel
            thasso Thasso Griebel
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            Dates

              Created:
              Updated:
              Resolved: