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  1. Barna Package
  2. BARNA-278

How to simulate a bad experiment?

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      I would like to simulate a very bad experiment. So far, the correlation between the expression level and the calculated FPKM generated from the FLUX-simulator has been too good to be true, around R-squared 0.8 to 0.9. I would like to generate an experiment full of biases (GC-bias) that has bad correlation between the gene expression level and observed reads number. Any suggestion on which parameters to tweak? THanks.

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            micha Micha Sammeth
            thasso Thasso Griebel
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