Details
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Bug
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Status: Resolved
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Major
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Resolution: Fixed
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Capacitor 1.2.2 (API 1.19)
Description
The Capacitor throws a NullPointerException when started with the ensembel annotation downloaded from ftp://ftp.ensembl.org/pub/release-69/gtf/homo_sapiens/Homo_sapiens.GRCh37.69.gtf.gz
[SOLVE] Deconvolving reads of overlapping transcripts.
decomposing [ERROR] Error while iterating loci:
java.lang.NullPointerException
at barna.model.Gene.getGeneID(Gene.java:899)
at barna.model.gff.GFFObject.createGFFObject(GFFObject.java:674)
at barna.flux.capacitor.reconstruction.FluxCapacitor$LocusSolver.outputGFF(FluxCapacitor.java:480)
at barna.flux.capacitor.reconstruction.FluxCapacitor$LocusSolver.run(FluxCapacitor.java:251)
at barna.flux.capacitor.reconstruction.FluxCapacitor.solve(FluxCapacitor.java:2147)
at barna.flux.capacitor.reconstruction.FluxCapacitor.explore(FluxCapacitor.java:2681)
at barna.flux.capacitor.reconstruction.FluxCapacitor.call(FluxCapacitor.java:1750)
at barna.flux.capacitor.reconstruction.FluxCapacitor.call(FluxCapacitor.java:76)
at barna.commons.launcher.Flux.main(Flux.java:196)
Attachments
Issue Links
- relates to
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- Resolved
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