Details
-
Bug
-
Status: Resolved
-
Major
-
Resolution: Fixed
-
Simulator 1.0.3 (API 1.12)
Description
This happens when setting the read length to 120 and works with read length of 100
[SEQUENCING] getting the reads
Initializing Fragment Index
Indexing ********** OK (00:00:11)
10697180 lines indexed (537775300 fragments, 15442 entries)
sequencing [ERROR] Error while sequencing : -1
java.lang.ArrayIndexOutOfBoundsException: -1
at barna.flux.simulator.error.CrossTalkModel.getTransition(CrossTalkModel.java:137)
at barna.flux.simulator.error.ModelPool.apply(ModelPool.java:122)
at barna.flux.simulator.Sequencer.createQSeq(Sequencer.java:644)
at barna.flux.simulator.Sequencer$SequenceWriter.writeRead(Sequencer.java:936)
at barna.flux.simulator.Sequencer$Processor.process(Sequencer.java:775)
at barna.flux.simulator.Sequencer.sequence(Sequencer.java:247)
at barna.flux.simulator.Sequencer.call(Sequencer.java:120)
at barna.flux.simulator.SimulationPipeline.call(SimulationPipeline.java:436)
at barna.flux.simulator.SimulationPipeline.call(SimulationPipeline.java:53)
at barna.commons.launcher.Flux.main(Flux.java:212)