Details
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Bug
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Status: Resolved
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Major
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Resolution: Fixed
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Simulator 1.0 (API 1.01)
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None
Description
I tried to generate few sequences using following par file
## File locations REF_FILE_NAME ./id2.gtf GEN_DIR ./ ## Library preparation # Expression NB_MOLECULES 100 TSS_MEAN 50 POLYA_SCALE 100 POLYA_SHAPE 1.5 # Fragmentation FRAG_SUBSTRATE RNA FRAG_METHOD UR FRAG_UR_ETA 350 # Reverse Transcription RTRANSCRIPTION NO RT_MOTIF default # Amplification PCR_DISTRIBUTION default GC_MEAN NaN PCR_PROBABILITY 0.05 # Size Filtering FILTERING NO ## Sequencing READ_NUMBER 150 READ_LENGTH 76 PAIRED_END NO FASTA YES ERR_FILE 76
Command
./flux-simulator -t simulator -p c.par -s -x -l lib
Error
Flux-Simulator v1.0 (Flux Library: 1.10) [INFO] I am collecting information on the run. [ERROR] Unable to load error model : unable to read error model from file /projects/dep_koornneef/grp_jimenez/bin/flux-simulator-1.0/bin/76 java.lang.RuntimeException: unable to read error model from file /projects/dep_koornneef/grp_jimenez/bin/flux-simulator-1.0/bin/76 at barna.flux.simulator.Sequencer.loadErrors(Sequencer.java:168) at barna.flux.simulator.SimulationPipeline.call(SimulationPipeline.java:391) at barna.flux.simulator.SimulationPipeline.call(SimulationPipeline.java:53) at barna.commons.launcher.Flux.main(Flux.java:212) [ERROR] Unable to load error model : unable to read error model from file /projects/dep_koornneef/grp_jimenez/bin/flux-simulator-1.0/bin/76