Details
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Bug
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Status: Open
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Major
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Resolution: Unresolved
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Simulator 1.2.1 (API 1.22)
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None
Description
a negative fragment length was observed during fragmentation/reverse transcription:
[LIBRARY] Reverse Transcription
[LIBRARY] Configuration
Mode: RH
PWM: default
RT MIN: 500
RT MAX: 5500
Processing Fragments * FAILED
[ERROR] Error while fragmenting : fromIndex(173) > toIndex(171)
java.lang.IllegalArgumentException: fromIndex(173) > toIndex(171)
at java.util.Arrays.rangeCheck(Arrays.java:794)
at java.util.Arrays.binarySearch(Arrays.java:1271)
at barna.flux.simulator.fragmentation.FragmentReverseTranscription.process(FragmentReverseTranscription.java:360)
at barna.flux.simulator.fragmentation.Fragmenter.process(Fragmenter.java:596)
at barna.flux.simulator.fragmentation.Fragmenter.call(Fragmenter.java:222)
at barna.flux.simulator.SimulationPipeline.call(SimulationPipeline.java:440)
at barna.flux.simulator.SimulationPipeline.call(SimulationPipeline.java:54)
at barna.commons.launcher.Flux.main(Flux.java:198