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  1. Barna Package
  2. BARNA-331

Fragment with negative length

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      Description

      a negative fragment length was observed during fragmentation/reverse transcription:

      [LIBRARY] Reverse Transcription
      [LIBRARY] Configuration
      Mode: RH
      PWM: default
      RT MIN: 500
      RT MAX: 5500

      Processing Fragments * FAILED
      [ERROR] Error while fragmenting : fromIndex(173) > toIndex(171)
      java.lang.IllegalArgumentException: fromIndex(173) > toIndex(171)
      at java.util.Arrays.rangeCheck(Arrays.java:794)
      at java.util.Arrays.binarySearch(Arrays.java:1271)
      at barna.flux.simulator.fragmentation.FragmentReverseTranscription.process(FragmentReverseTranscription.java:360)
      at barna.flux.simulator.fragmentation.Fragmenter.process(Fragmenter.java:596)
      at barna.flux.simulator.fragmentation.Fragmenter.call(Fragmenter.java:222)
      at barna.flux.simulator.SimulationPipeline.call(SimulationPipeline.java:440)
      at barna.flux.simulator.SimulationPipeline.call(SimulationPipeline.java:54)
      at barna.commons.launcher.Flux.main(Flux.java:198

        Attachments

        1. param.par
          8 kB
        2. sim1.tgz
          2.75 MB

          Activity

            People

            Assignee:
            thasso Thasso Griebel
            Reporter:
            micha Micha Sammeth
            Votes:
            1 Vote for this issue
            Watchers:
            3 Start watching this issue

              Dates

              Created:
              Updated: