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  1. Barna Package
  2. BARNA-310

incorrect junction and intron coordinates

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Details

    • Bug
    • Status: Resolved
    • Major
    • Resolution: Won't Fix
    • Capacitor 1.2.3 (API 1.20)
    • Capacitor
    • None

    Description

      In the flux capacitor, the junction goes from the last base of an exon to the first base of another exon. It should start 1 bp after the end of an exon and end 1 bp before the start of another exon.
      for example:
      exon1 = 3-10
      exon2= 17-24
      -> junction = 11-16
      and not 10-17 as it is now.

      This problem also affects the intron rows. In general junction and intron rows have 2 more bp than what they should have.

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            micha Micha Sammeth
            sdjebali Sarah Djebali
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            Dates

              Created:
              Updated:
              Resolved: