[BARNA-309] Capacitor creates lots of threads when running on BAM files - Jira

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Type: Bug
Status: Resolved
Priority: Minor
Resolution: Fixed
Affects Version/s: Capacitor 1.2.3 (API 1.20)
Fix Version/s: Capacitor 1.3 (API 1.23)
Component/s: Capacitor
Labels:

Description

For each job running it can have up to 30 threads open.

For example, with 10 jobs running on the same machine:

# ps -eLf|grep -c jlagarde
268

jlagarde 36682 36675 36682  0   25 09:06 ?        00:00:00 java -Xmx16000000000 -DwrapperDir=/nfs/users/rg/epalumbo/bin/flux-capacitor-1.2.4-SNAPSHOT/bin/bin -Djava.io.tmpdir=
jlagarde 36682 36675 36683 15   25 09:06 ?        00:02:46 java -Xmx16000000000 -DwrapperDir=/nfs/users/rg/epalumbo/bin/flux-capacitor-1.2.4-SNAPSHOT/bin/bin -Djava.io.tmpdir=
jlagarde 36682 36675 36684 11   25 09:06 ?        00:02:00 java -Xmx16000000000 -DwrapperDir=/nfs/users/rg/epalumbo/bin/flux-capacitor-1.2.4-SNAPSHOT/bin/bin -Djava.io.tmpdir=
jlagarde 36682 36675 36685 11   25 09:06 ?        00:02:08 java -Xmx16000000000 -DwrapperDir=/nfs/users/rg/epalumbo/bin/flux-capacitor-1.2.4-SNAPSHOT/bin/bin -Djava.io.tmpdir=
jlagarde 36682 36675 36686 11   25 09:06 ?        00:02:02 java -Xmx16000000000 -DwrapperDir=/nfs/users/rg/epalumbo/bin/flux-capacitor-1.2.4-SNAPSHOT/bin/bin -Djava.io.tmpdir=
jlagarde 36682 36675 36687 10   25 09:06 ?        00:01:59 java -Xmx16000000000 -DwrapperDir=/nfs/users/rg/epalumbo/bin/flux-capacitor-1.2.4-SNAPSHOT/bin/bin -Djava.io.tmpdir=
jlagarde 36682 36675 36688 11   25 09:06 ?        00:02:05 java -Xmx16000000000 -DwrapperDir=/nfs/users/rg/epalumbo/bin/flux-capacitor-1.2.4-SNAPSHOT/bin/bin -Djava.io.tmpdir=
jlagarde 36682 36675 36689 10   25 09:06 ?        00:01:59 java -Xmx16000000000 -DwrapperDir=/nfs/users/rg/epalumbo/bin/flux-capacitor-1.2.4-SNAPSHOT/bin/bin -Djava.io.tmpdir=
jlagarde 36682 36675 36690 11   25 09:06 ?        00:02:06 java -Xmx16000000000 -DwrapperDir=/nfs/users/rg/epalumbo/bin/flux-capacitor-1.2.4-SNAPSHOT/bin/bin -Djava.io.tmpdir=
jlagarde 36682 36675 36691 11   25 09:06 ?        00:02:03 java -Xmx16000000000 -DwrapperDir=/nfs/users/rg/epalumbo/bin/flux-capacitor-1.2.4-SNAPSHOT/bin/bin -Djava.io.tmpdir=
jlagarde 36682 36675 36692 10   25 09:06 ?        00:01:59 java -Xmx16000000000 -DwrapperDir=/nfs/users/rg/epalumbo/bin/flux-capacitor-1.2.4-SNAPSHOT/bin/bin -Djava.io.tmpdir=
jlagarde 36682 36675 36693 11   25 09:06 ?        00:02:06 java -Xmx16000000000 -DwrapperDir=/nfs/users/rg/epalumbo/bin/flux-capacitor-1.2.4-SNAPSHOT/bin/bin -Djava.io.tmpdir=
jlagarde 36682 36675 36694 11   25 09:06 ?        00:02:02 java -Xmx16000000000 -DwrapperDir=/nfs/users/rg/epalumbo/bin/flux-capacitor-1.2.4-SNAPSHOT/bin/bin -Djava.io.tmpdir=
jlagarde 36682 36675 36695 10   25 09:06 ?        00:01:59 java -Xmx16000000000 -DwrapperDir=/nfs/users/rg/epalumbo/bin/flux-capacitor-1.2.4-SNAPSHOT/bin/bin -Djava.io.tmpdir=
jlagarde 36682 36675 36696 11   25 09:06 ?        00:02:02 java -Xmx16000000000 -DwrapperDir=/nfs/users/rg/epalumbo/bin/flux-capacitor-1.2.4-SNAPSHOT/bin/bin -Djava.io.tmpdir=
jlagarde 36682 36675 36697  0   25 09:06 ?        00:00:03 java -Xmx16000000000 -DwrapperDir=/nfs/users/rg/epalumbo/bin/flux-capacitor-1.2.4-SNAPSHOT/bin/bin -Djava.io.tmpdir=
jlagarde 36682 36675 36698  0   25 09:06 ?        00:00:00 java -Xmx16000000000 -DwrapperDir=/nfs/users/rg/epalumbo/bin/flux-capacitor-1.2.4-SNAPSHOT/bin/bin -Djava.io.tmpdir=
jlagarde 36682 36675 36699  0   25 09:06 ?        00:00:00 java -Xmx16000000000 -DwrapperDir=/nfs/users/rg/epalumbo/bin/flux-capacitor-1.2.4-SNAPSHOT/bin/bin -Djava.io.tmpdir=
jlagarde 36682 36675 36700  0   25 09:06 ?        00:00:00 java -Xmx16000000000 -DwrapperDir=/nfs/users/rg/epalumbo/bin/flux-capacitor-1.2.4-SNAPSHOT/bin/bin -Djava.io.tmpdir=
jlagarde 36682 36675 36701  0   25 09:06 ?        00:00:01 java -Xmx16000000000 -DwrapperDir=/nfs/users/rg/epalumbo/bin/flux-capacitor-1.2.4-SNAPSHOT/bin/bin -Djava.io.tmpdir=
jlagarde 36682 36675 36702  0   25 09:06 ?        00:00:01 java -Xmx16000000000 -DwrapperDir=/nfs/users/rg/epalumbo/bin/flux-capacitor-1.2.4-SNAPSHOT/bin/bin -Djava.io.tmpdir=
jlagarde 36682 36675 36703  0   25 09:06 ?        00:00:00 java -Xmx16000000000 -DwrapperDir=/nfs/users/rg/epalumbo/bin/flux-capacitor-1.2.4-SNAPSHOT/bin/bin -Djava.io.tmpdir=
jlagarde 36682 36675 36704  0   25 09:06 ?        00:00:00 java -Xmx16000000000 -DwrapperDir=/nfs/users/rg/epalumbo/bin/flux-capacitor-1.2.4-SNAPSHOT/bin/bin -Djava.io.tmpdir=
jlagarde 36682 36675 36848 17   25 09:11 ?        00:02:20 java -Xmx16000000000 -DwrapperDir=/nfs/users/rg/epalumbo/bin/flux-capacitor-1.2.4-SNAPSHOT/bin/bin -Djava.io.tmpdir=
jlagarde 36682 36675 36855 20   25 09:12 ?        00:02:36 java -Xmx16000000000 -DwrapperDir=/nfs/users/rg/epalumbo/bin/flux-capacitor-1.2.4-SNAPSHOT/bin/bin -Djava.io.tmpdir=

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Assignee:: Emilio Palumbo

Reporter:: Emilio Palumbo

Votes:: 0 Vote for this issue

Watchers:: 3 Start watching this issue

Dates

Created:: 10/May/13 11:03 AM

Updated:: 09/Oct/15 4:20 AM

Resolved:: 12/Nov/13 11:05 AM