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  1. Barna Package
  2. BARNA-302

Number of Events is lower than in the 2007 webserver

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    Details

    • Type: Bug
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: AStalavista 3.1 (API 1.21)
    • Fix Version/s: None
    • Component/s: Astalavista
    • Security Level: Public (Public Level)
    • Labels:
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      Description

      Dear Sylvain and Micha,

      Recently I am using AStalavista to do a alternative splicing project with our own genome. And I got one question based on the software.
      I have download the newest version of AStalavista which is V3.01, However I feel a bit strong because the result produced by software is different between run AStalavista locally on your own computer and run it on your web server (http://genome.crg.es/astalavista/) (with the same gtf file). When I run it locally, it showed 7092 AS event has been detected, but based on the result produced by the web server, the AS event is more than 8000.

      I don't know what happened, that's why I want your help. the command I used on my own computer is
      >bash astalavista -t asta -i gtf_file

      I didn't attached the gtf file I intend to use, as it is oversized, but if u need it, I can gzip it and send to you. Just let me know.

      Thanks a lot!

      Best

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            • Assignee:
              micha M Sammeth
              Reporter:
              guest Guest
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              Dates

              • Created:
                Updated: