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  1. Barna Package
  2. BARNA-195

TSS_MEAN still gives error

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      Error: TSS_MEAN still gives error. Yes, the nightly build version also gives error when using PCR amplification.**

       
      TSS_MEAN 25
      POLYA_SCALE NaN
      POLYA_SHAPE NaN}
      

      This doesn't work, ends up with the same error: *I was not able to perform even filtering before. But now, it passes that stage, but fails at PCR amplification.*

       
      [INFO] Loading default PCR distribution
      preparing transcript sequences ******* ERROR
      [ERROR] Error while preparing sequences: Problems reading sequence Chr3: pos -1, len 100,
      ...
      FAILED
      [ERROR] Error while fragmenting : Problems reading sequence Chr3: pos -1, len 100,
      check whether chromosomal sequence exists / has the correct size
      java.lang.RuntimeException: Problems reading sequence Chr3: pos -1, len 100,
      check whether chromosomal sequence exists / has the correct size
      ... 8 more
      

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            micha Micha Sammeth
            micha Micha Sammeth
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              Updated:
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